STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_2271N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P50864; match to protein family HMM PF01520. (239 aa)    
Predicted Functional Partners:
CHY_2485
N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.
 
 
 
0.922
CHY_2569
N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.
  
  
 
0.922
CHY_2541
Stage II sporulation protein D; Identified by similarity to SP:P07372; match to protein family HMM TIGR02669.
  
 0.760
CHY_0820
Rhomboid family protein; Identified by similarity to GB:AAM23684.1; match to protein family HMM PF01694.
  
   0.611
CHY_0305
Putative germination protein GerM; Identified by similarity to SP:P39072.
      0.605
CHY_1662
Putative prophage LambdaCh01, tail tape measure protein.
  
    0.567
CHY_0674
Putative cell-wall associated endopeptidase; Identified by similarity to SP:P54421; similarity to SP:Q01838; match to protein family HMM PF00877; match to protein family HMM PF01476.
 
  
 0.560
CHY_2268
3,4-dihydroxyphenylacetate 2,3-dioxygenase, homolog/AMMECR1 domain protein; Identified by similarity to SP:Q05353; match to protein family HMM PF01871; match to protein family HMM PF02900; match to protein family HMM TIGR00296.
       0.541
cotJC2
cotJC protein; Identified by similarity to SP:Q45538; match to protein family HMM PF02915.
     
 0.528
CHY_2267
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.511
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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