CHY_2361 protein (Carboxydothermus hydrogenoformans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CHY_2361

Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (334 aa)

Predicted Functional Partners:

CHY_2362

0.999

CHY_2363

0.998

CHY_1130

0.990

CHY_2360

0.979

CHY_1129

0.912

CHY_2279

0.904

CHY_1126

0.903

CHY_0117

0.900

CHY_0090

0.748

CHY_1128

0.637

Your Current Organism:

Carboxydothermus hydrogenoformans

NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CHY_0090	CHY_1126	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.867
CHY_0090	CHY_2279	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Cobalt ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.790
CHY_0090	CHY_2360	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.880
CHY_0090	CHY_2361	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.748
CHY_0117	CHY_1126	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.900
CHY_0117	CHY_2361	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.900
CHY_1126	CHY_0090	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.867
CHY_1126	CHY_0117	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.900
CHY_1126	CHY_1128	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, peptide-binding protein; Identified by similarity to SP:P23847; match to protein family HMM PF00496.	0.882
CHY_1126	CHY_1129	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P94311; match to protein family HMM PF00528.	0.955
CHY_1126	CHY_1130	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P94312; match to protein family HMM PF00528.	0.994
CHY_1126	CHY_2360	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.914
CHY_1126	CHY_2361	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.903
CHY_1126	CHY_2362	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P26904; match to protein family HMM PF00528.	0.999
CHY_1126	CHY_2363	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P24138; match to protein family HMM PF00528.	0.995
CHY_1128	CHY_1126	Oligopeptide/dipeptide ABC transporter, peptide-binding protein; Identified by similarity to SP:P23847; match to protein family HMM PF00496.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.882
CHY_1128	CHY_1129	Oligopeptide/dipeptide ABC transporter, peptide-binding protein; Identified by similarity to SP:P23847; match to protein family HMM PF00496.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P94311; match to protein family HMM PF00528.	0.998
CHY_1128	CHY_1130	Oligopeptide/dipeptide ABC transporter, peptide-binding protein; Identified by similarity to SP:P23847; match to protein family HMM PF00496.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P94312; match to protein family HMM PF00528.	0.998
CHY_1128	CHY_2360	Oligopeptide/dipeptide ABC transporter, peptide-binding protein; Identified by similarity to SP:P23847; match to protein family HMM PF00496.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.686
CHY_1128	CHY_2361	Oligopeptide/dipeptide ABC transporter, peptide-binding protein; Identified by similarity to SP:P23847; match to protein family HMM PF00496.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.637