Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DNO_0646 | DNO_0926 | DNO_0646 | DNO_0926 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | Identified by match to protein family HMM PF01817. | 0.566 |
| DNO_0646 | aroA | DNO_0646 | DNO_0111 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.614 |
| DNO_0646 | aroB | DNO_0646 | DNO_1084 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.742 |
| DNO_0646 | aroC | DNO_0646 | DNO_1072 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.959 |
| DNO_0646 | aroE | DNO_0646 | DNO_0509 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | Shhikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | 0.759 |
| DNO_0646 | aroK | DNO_0646 | DNO_0611 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.684 |
| DNO_0646 | rpsA | DNO_0646 | DNO_0113 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.441 |
| DNO_0646 | serC | DNO_0646 | DNO_0670 | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.428 |
| DNO_0926 | DNO_0646 | DNO_0926 | DNO_0646 | Identified by match to protein family HMM PF01817. | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | 0.566 |
| DNO_0926 | aroA | DNO_0926 | DNO_0111 | Identified by match to protein family HMM PF01817. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.709 |
| DNO_0926 | aroC | DNO_0926 | DNO_1072 | Identified by match to protein family HMM PF01817. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.671 |
| DNO_0926 | aroE | DNO_0926 | DNO_0509 | Identified by match to protein family HMM PF01817. | Shhikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | 0.433 |
| DNO_0926 | aroK | DNO_0926 | DNO_0611 | Identified by match to protein family HMM PF01817. | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.495 |
| DNO_0926 | serC | DNO_0926 | DNO_0670 | Identified by match to protein family HMM PF01817. | Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.486 |
| aroA | DNO_0646 | DNO_0111 | DNO_0646 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Identified by match to protein family HMM PF00425; match to protein family HMM PF01063. | 0.614 |
| aroA | DNO_0926 | DNO_0111 | DNO_0926 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Identified by match to protein family HMM PF01817. | 0.709 |
| aroA | aroB | DNO_0111 | DNO_1084 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.978 |
| aroA | aroC | DNO_0111 | DNO_1072 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.983 |
| aroA | aroE | DNO_0111 | DNO_0509 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Shhikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | 0.881 |
| aroA | aroK | DNO_0111 | DNO_0611 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.980 |
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