node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DNO_0159 | def | DNO_0159 | DNO_0156 | Hypothetical protein; Identified by Glimmer2; putative. | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.644 |
DNO_0159 | fmt | DNO_0159 | DNO_0157 | Hypothetical protein; Identified by Glimmer2; putative. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.644 |
DNO_0159 | rsmB | DNO_0159 | DNO_0158 | Hypothetical protein; Identified by Glimmer2; putative. | rRNA SAM-dependent methyltransferase, Fmu; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.804 |
def | DNO_0159 | DNO_0156 | DNO_0159 | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Hypothetical protein; Identified by Glimmer2; putative. | 0.644 |
def | fmt | DNO_0156 | DNO_0157 | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.975 |
def | rpmD | DNO_0156 | DNO_1257 | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. | 0.747 |
def | rpsJ | DNO_0156 | DNO_1276 | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.813 |
def | rsmB | DNO_0156 | DNO_0158 | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | rRNA SAM-dependent methyltransferase, Fmu; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.814 |
fmt | DNO_0159 | DNO_0157 | DNO_0159 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.644 |
fmt | def | DNO_0157 | DNO_0156 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.975 |
fmt | rlmN | DNO_0157 | DNO_0514 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.451 |
fmt | rsmB | DNO_0157 | DNO_0158 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | rRNA SAM-dependent methyltransferase, Fmu; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.996 |
ligA | rsmB | DNO_0389 | DNO_0158 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | rRNA SAM-dependent methyltransferase, Fmu; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.887 |
rlmN | fmt | DNO_0514 | DNO_0157 | Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.451 |
rlmN | rsmB | DNO_0514 | DNO_0158 | Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | rRNA SAM-dependent methyltransferase, Fmu; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.927 |
rpmD | def | DNO_1257 | DNO_0156 | 50S ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. | Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.747 |
rpmD | rpoB | DNO_1257 | DNO_1282 | 50S ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.909 |
rpmD | rpsJ | DNO_1257 | DNO_1276 | 50S ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.990 |
rpmD | rrmJ | DNO_1257 | DNO_1239 | 50S ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. | 23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.822 |
rpmD | rsmB | DNO_1257 | DNO_0158 | 50S ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. | rRNA SAM-dependent methyltransferase, Fmu; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.822 |