Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75067.1ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (589 aa)    
Predicted Functional Partners:
ABK73576.1
L-ornithine 5-monooxygenase.
 
  
 0.926
ABK73374.1
Siderophore utilization protein; Identified by match to protein family HMM PF04954; match to protein family HMM PF08021.
  
 0.896
ABK74529.1
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
   
0.885
ABK74162.1
Identified by match to protein family HMM PF04954; match to protein family HMM PF08021.
  
 0.885
ABK72398.1
Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
 
 
 0.873
ABK70627.1
2,3-dihydroxybenzoate-AMP ligase; Identified by match to protein family HMM PF00501.
  
  
 0.863
ABK71911.1
Conserved domain protein; Identified by match to protein family HMM PF03621.
 
   
 0.830
ABK70771.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
   
 
 0.824
ABK75414.1
Anthranilate synthase component I; Identified by match to protein family HMM PF00425.
  
  
 0.816
ABK72168.1
Cobalt transport protein CbiM.
     
 0.800
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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