Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71242.1Periplasmic binding protein; Identified by match to protein family HMM PF01497. (315 aa)    
Predicted Functional Partners:
ABK70092.1
Ferric enterobactin transport system permease protein FepD; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.987
FecE
Ferric enterobactin transport ATP-binding protein FepC; Identified by match to protein family HMM PF00005.
 
 0.964
ABK73192.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.912
ABK71663.1
Fe uptake system permease; Identified by match to protein family HMM PF00005.
 
 0.908
ABK74043.1
ABC transporter, membrane spanning protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.843
ABK74012.1
Fe uptake system integral membrane protein; Identified by match to protein family HMM PF01032; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.831
ABK73807.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.829
ABK74561.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.829
ABK70569.1
Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.
  
 0.712
ABK72739.1
FAD-binding 9, siderophore-interacting; Identified by match to protein family HMM PF04954; match to protein family HMM PF08021.
 
 
 0.687
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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