Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74001.1Sensory histidine kinase; Identified by match to protein family HMM PF02518. (388 aa)    
Predicted Functional Partners:
ABK74061.1
DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.970
ABK74516.1
Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.892
ABK70729.1
Transcriptional regulatory protein DegU; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.891
ABK70689.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.891
ABK74349.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.891
ABK73294.1
Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.890
ABK72342.1
Transcriptional regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.889
ABK70761.1
Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.889
ABK70063.1
Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.
 
 0.889
ABK74226.1
Two-component regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.889
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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