Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK69643.1Putative periplasmic solute-binding protein; Identified by match to protein family HMM PF03401. (335 aa)    
Predicted Functional Partners:
ABK70240.1
Integral membrane protein; Identified by match to protein family HMM PF01970.
 
  
 0.976
ABK71321.1
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.941
ABK76022.1
Integral membrane protein; Identified by match to protein family HMM PF01970.
 
  
 0.920
ABK70628.1
Integral membrane protein.
 
  
 0.903
ABK72071.1
Identified by match to protein family HMM PF03401.
  
  
 
0.885
ABK71794.1
Transcriptional regulatory protein CitT; Identified by match to protein family HMM PF00072.
 
    0.570
ABK70315.1
Two component system histidine kinase; Identified by match to protein family HMM PF02518.
 
    0.547
ABK74119.1
Mandelate racemase/muconate lactonizing enzyme; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
    0.511
ABK71635.1
Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
  
    0.504
ABK74268.1
Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440.
       0.492
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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