Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73344.1Conserved hypothetical protein. (103 aa)    
Predicted Functional Partners:
ABK75765.1
Putative conserved membrane alanine rich protein.
  
     0.751
ABK74249.1
Conserved hypothetical protein.
  
     0.730
ABK72725.1
Conserved hypothetical protein.
  
     0.703
ABK69526.1
LppL protein.
  
     0.671
ABK70257.1
Conserved hypothetical protein.
  
     0.650
ABK75511.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04167.
  
     0.646
ABK72197.1
Transmembrane transport protein; Identified by match to protein family HMM PF07690.
       0.636
ABK75960.1
Conserved hypothetical protein.
  
     0.619
ABK70832.1
Tuberculin related peptide.
  
     0.579
ABK72474.1
Conserved hypothetical protein.
  
     0.567
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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