Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75752.1Transmembrane transport protein; Identified by match to protein family HMM PF07690. (467 aa)    
Predicted Functional Partners:
ABK73089.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
     0.602
frc-2
Formyl-coenzyme A transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily.
 
   
 0.530
panE
2-dehydropantoate 2-reductase; Identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745.
 
     0.512
ABK69733.1
NAD-dependent formate dehydrogenase delta subunit.
  
     0.487
ABK75831.1
Integral membrane transporter; Identified by match to protein family HMM PF07690.
 
 
0.461
ABK74133.1
Integral membrane transporter; Identified by match to protein family HMM PF07690.
 
 
0.461
ABK75662.1
Ferric iron-binding periplasmic protein of ABC transporter; Identified by match to protein family HMM PF01547.
  
  
 0.437
ABK71334.1
ABC Polyamine/Opine/Phosphonate transporter, periplasmic ligand binding protein.
  
  
 0.437
ABK74489.1
ABC transporter, periplasmic substrate-binding protein, putative.
  
  
 0.437
ABK73120.1
Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.
 
  
 0.420
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (28%) [HD]