Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75561.1ABC polar amino acid family protein transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. (323 aa)    
Predicted Functional Partners:
ABK70491.1
Identified by match to protein family HMM PF00005.
 0.983
ABK69529.1
Glutamine ABC transporter periplasmic-binding protein; Identified by match to protein family HMM PF00497.
 
 0.971
ABK71953.1
Identified by match to protein family HMM PF00005.
 0.932
ABK70751.1
Identified by match to protein family HMM PF00005.
 0.931
GlnQ
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.929
ABK73235.1
Glutamine transport ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.
 0.928
ehuA
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03005.
 0.926
ABK69664.1
Glutamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.926
ABK74283.1
Glutamate transport ATP-binding protein GluA; Identified by match to protein family HMM PF00005.
 0.925
ABK73842.1
ABC transporter, ATP-binding protein GluA; Identified by match to protein family HMM PF00005.
 0.924
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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