Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK75158.1Lyase; Identified by match to protein family HMM PF00903. (139 aa)    
Predicted Functional Partners:
ABK75155.1
Transcriptional regulator; Identified by match to protein family HMM PF00165.
 
    0.971
ABK74387.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.838
ABK70417.1
Identified by match to protein family HMM PF02678; Belongs to the pirin family.
     
 0.753
ABK75388.1
L-sorbosone dehydrogenase.
       0.738
ABK71470.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.
 
 
 0.577
ABK70375.1
LprO protein.
       0.535
ABK75141.1
Identified by match to protein family HMM PF00903.
 
 
 0.518
ABK75375.1
3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00106.
       0.507
ABK75667.1
Identified by match to protein family HMM PF00581; match to protein family HMM PF00753.
  
 
  0.471
ABK72512.1
Putative transcriptional regulatory protein; Identified by match to protein family HMM PF00486; match to protein family HMM PF03704.
  
    0.458
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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