Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK75388.1L-sorbosone dehydrogenase. (427 aa)    
Predicted Functional Partners:
ABK70417.1
Identified by match to protein family HMM PF02678; Belongs to the pirin family.
  
    0.851
ABK72273.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF01011; match to protein family HMM TIGR03075.
 
 
 0.768
ABK74387.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
     
 0.753
ABK75155.1
Transcriptional regulator; Identified by match to protein family HMM PF00165.
       0.748
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
    
 0.746
ABK70730.1
Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.
   
 
  0.739
ABK75158.1
Lyase; Identified by match to protein family HMM PF00903.
       0.738
ABK74482.1
PTS system, glucose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826.
     
  0.671
ABK71109.1
Sodium/calcium exchanger protein; Identified by match to protein family HMM PF01699.
 
    0.582
ABK75375.1
3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00106.
     
 0.549
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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