STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK70417.1Identified by match to protein family HMM PF02678; Belongs to the pirin family. (238 aa)    
Predicted Functional Partners:
ABK75388.1
L-sorbosone dehydrogenase.
  
    0.887
ABK75158.1
Lyase; Identified by match to protein family HMM PF00903.
  
  
 0.757
ABK74387.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
    0.754
ABK75155.1
Transcriptional regulator; Identified by match to protein family HMM PF00165.
  
    0.754
ABK70375.1
LprO protein.
  
  
 0.650
ABK75926.1
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; Identified by match to protein family HMM PF02900.
 
  
 0.621
ABK75375.1
3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00106.
  
    0.555
ABK71470.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.
  
  
 0.454
ABK72129.1
Identified by match to protein family HMM PF00903.
     
 0.451
ABK74968.1
Chromosome condensation protein; Identified by match to protein family HMM PF02678; match to protein family HMM PF05726; Belongs to the pirin family.
 
    
0.450
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.