Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74272.13-demethylubiquinone-9 3-methyltransferase; Identified by match to protein family HMM PF06983. (164 aa)    
Predicted Functional Partners:
ABK72129.1
Identified by match to protein family HMM PF00903.
 
  
 0.551
ecf
Extra cytoplasmic sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
 
     0.537
ABK70338.1
RNA polymerase ECF-subfamily protein sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
 
     0.530
ABK69584.1
Alcohol dehydrogenase B; Identified by match to protein family HMM PF00107.
       0.528
ABK71935.1
CalU12 protein; Identified by match to protein family HMM PF05988.
 
    0.452
ABK73323.1
Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.
       0.413
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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