Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75876.1Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (189 aa)    
Predicted Functional Partners:
ABK70558.1
Adenylate and Guanylate cyclase catalytic domain protein; Identified by match to protein family HMM PF00211.
     
 0.580
ABK75317.1
TonB-dependent receptor; Identified by match to protein family HMM PF02082; match to protein family HMM PF08220.
  
   
 0.528
ABK69676.1
MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
  
    0.470
ABK73296.1
MmpS5 protein; Identified by match to protein family HMM PF05423.
       0.458
ABK72296.1
Acyltransferase 3; Identified by match to protein family HMM PF01757.
  
   
 0.442
ABK74645.1
ISMsm1, transposase orfB; Identified by similarity to GP:16551202; match to protein family HMM PF00665.
   
  
 0.439
ABK75224.1
Oxidoreductase; Identified by match to protein family HMM PF00106.
     
 0.427
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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