Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK69870.1Metallopeptidase; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649. (666 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
 0.824
ABK72092.1
Conserved hypothetical protein.
      
 0.800
ABK74047.1
Sensor-type histidine kinase PrrB; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
      
 0.768
ABK72873.1
Two component response transcriptional regulatory protein prra; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
   
  
 0.761
ABK70520.1
Probable conserved membrane protein.
   
 0.718
ABK74412.1
Putative conserved transmembrane protein.
   
 0.718
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.620
pepN
Identified by match to protein family HMM PF01433; match to protein family HMM TIGR02412.
 
   
 0.620
ABK73812.1
Peptidoglycan-binding LysM; Identified by match to protein family HMM PF01551.
      
 0.578
ABK73795.1
Identified by match to protein family HMM PF00326; match to protein family HMM PF02897.
 
  
 0.537
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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