Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ABK73198.1ISMsm3, transposase; Identified by similarity to GP:4838457; match to protein family HMM PF01609. (468 aa)    
Predicted Functional Partners:
ABK73693.1
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.805
ABK74440.1
Undecaprenyl-phosphate galactosephosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
  
 
 0.760
ABK71692.1
O-antigen export system, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 0.740
ABK76192.1
O-antigen export system, permease protein; Identified by match to protein family HMM PF01061.
  
  
 0.736
ABK70977.1
O-antigen polymerase, putative; Identified by match to protein family HMM PF04932.
  
 
 0.619
ABK71934.1
Integral membrane protein; Identified by match to protein family HMM PF00892.
  
     0.513
ABK70520.1
Probable conserved membrane protein.
       0.489
ABK74412.1
Putative conserved transmembrane protein.
       0.489
ABK72163.1
Nucleotide-sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.479
cysE
Serine O-acetyltransferase.
  
 
 0.473
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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