Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK69705.1Probable conserved transmembrane protein. (122 aa)    
Predicted Functional Partners:
ABK71138.1
Secreted peptidase; Identified by match to protein family HMM PF01551.
     
 0.962
ABK71706.1
Conserved hypothetical protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374.
     
 0.835
ABK75033.1
Sensor-type histidine kinase PrrB; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
   
  
 0.824
ABK73632.1
Conserved hypothetical protein.
      
 0.821
ABK72092.1
Conserved hypothetical protein.
      
 0.796
ABK74047.1
Sensor-type histidine kinase PrrB; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
      
 0.765
ABK72873.1
Two component response transcriptional regulatory protein prra; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
   
  
 0.733
ABK74369.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01841.
      
 0.624
ABK73203.1
Integral membrane protein; Identified by match to protein family HMM PF01594.
       0.591
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
 0.526
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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