Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73203.1Integral membrane protein; Identified by match to protein family HMM PF01594. (379 aa)    
Predicted Functional Partners:
ABK71042.1
Conserved hypothetical protein.
     
 0.830
ABK71706.1
Conserved hypothetical protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374.
     
 0.738
ABK69705.1
Probable conserved transmembrane protein.
       0.591
ABK71138.1
Secreted peptidase; Identified by match to protein family HMM PF01551.
  
    0.582
tatC
Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
     
 0.547
ABK73379.1
Conserved hypothetical protein.
     
 0.442
ABK73625.1
Conserved hypothetical protein.
     
 0.442
ABK74262.1
Conserved hypothetical protein, putative; Identified by match to protein family HMM PF00657.
     
 0.442
ABK71108.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00657.
     
 0.442
ABK73885.1
Conserved hypothetical protein, putative; Identified by match to protein family HMM PF00657.
     
 0.442
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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