Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75092.1Arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03711. (485 aa)    
Predicted Functional Partners:
speB-2
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
 
 
 0.984
ABK69779.1
Agmatine deiminase; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.
  
 
 0.978
argH
Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.
    
 0.945
arcA-2
Arginine deiminase; Identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078.
    
 0.943
ABK74386.1
Amidinotransferase; Identified by match to protein family HMM PF02274.
     
 0.940
speB-3
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
  
 
 0.889
speB-4
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
  
 
 0.889
arcA
Arginine deiminase; Identified by similarity to SP:P13981; match to protein family HMM PF02274; match to protein family HMM TIGR01078.
    
 0.869
speB
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
  
 
 0.834
ABK72866.1
Transmembrane transport protein; Identified by match to protein family HMM PF07690.
     
 0.667
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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