Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK72692.1Identified by match to protein family HMM PF00936. (202 aa)    
Predicted Functional Partners:
ABK69839.1
Ethanolamine utilization protein EutN; Identified by match to protein family HMM PF03319.
 
 
 0.971
ABK74854.1
Propanediol utilization protein PduA; Identified by match to protein family HMM PF00936.
 
 
 
 0.943
ABK72673.1
Putative aminotransferase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.870
ABK74973.1
Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171.
 
   
 0.868
ABK73739.1
Transketoloase, C half; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.
      
 0.824
ABK71528.1
Conserved hypothetical protein.
      
 0.824
ABK70674.1
Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
      
 0.824
ABK69867.1
Lipase; Identified by match to protein family HMM PF07859.
      
 0.824
ABK71746.1
CDP-diacylglycerol-glycerol-3-phosphate; Identified by match to protein family HMM PF01066.
      
 0.824
ABK73753.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
      
 0.807
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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