Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK75785.1Identified by match to protein family HMM PF02668. (281 aa)    
Predicted Functional Partners:
ABK71342.1
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.
 
     0.923
ABK73660.1
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.
 
     0.837
ABK74227.1
Conserved hypothetical protein.
       0.807
ABK70361.1
Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF01047.
 
   
 0.797
ABK74307.1
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
  
 
  0.778
ABK74633.1
Extracellular solute-binding protein, family protein 3; Identified by match to protein family HMM PF04069.
  
 
 0.717
fabG
3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370.
 
   
 0.711
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
  
 
 0.710
ABK73531.1
Conserved hypothetical protein.
 
   
 0.664
ABK74458.1
Conserved hypothetical protein.
       0.637
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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