Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK70361.1Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF01047. (151 aa)    
Predicted Functional Partners:
ABK73660.1
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.
 
   
 0.894
ABK71342.1
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.
 
   
 0.841
ABK74458.1
Conserved hypothetical protein.
       0.802
ABK75785.1
Identified by match to protein family HMM PF02668.
 
   
 0.797
fabG
3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370.
 
 
 0.732
ABK76071.1
Amidohydrolase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
     0.724
ABK74307.1
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
 
  
 0.720
ABK74227.1
Conserved hypothetical protein.
       0.698
ABK72036.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
   
 0.670
ABK72509.1
Conserved hypothetical protein.
  
     0.587
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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