Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70279.1Conserved hypothetical protein; Identified by match to protein family HMM PF07366; match to protein family HMM TIGR02096. (151 aa)    
Predicted Functional Partners:
ABK71426.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02096.
      
0.776
ABK75654.1
AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.
  
 
  0.757
ABK74396.1
Aldehyde dehydrogenase; Identified by match to protein family HMM PF00171.
    
  0.732
ABK71847.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.651
ABK70314.1
FMN oxidoreductase; Identified by match to protein family HMM PF01613.
       0.646
ABK74406.1
acyl-CoA dehydrogenase, short-chain specific, putative; Identified by match to protein family HMM PF08028.
       0.464
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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