STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71915.1Conserved hypothetical protein; Identified by match to protein family HMM PF07287. (584 aa)    
Predicted Functional Partners:
ABK70870.1
Carboxyl transferase domain protein; Identified by match to protein family HMM PF01039.
 
 
 0.933
ABK72839.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03084.
 
     0.923
ABK72823.1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786.
 
 
 0.918
ABK71379.1
acyl-CoA dehydrogenase fadE12; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
  
 0.846
ABK71822.1
enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.
  
 
 0.824
ABK75320.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
  
 0.768
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
  
 0.763
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 
 0.762
hmgA
Homogentisate 1,2-dioxygenase; Identified by match to protein family HMM PF04209.
  
 0.756
ABK75886.1
acetyl-CoA carboxylase carboxyltransferase; Identified by match to protein family HMM PF01039.
 
 
 0.726
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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