Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72581.1Hypothetical protein; Identified by Glimmer2; putative. (488 aa)    
Predicted Functional Partners:
ABK70333.1
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.969
ABK76126.1
Conserved hypothetical protein.
 
  
 0.957
dapB-2
Dihydrodipicolinate reductase, N-terminus domain protein; Identified by match to protein family HMM PF01113.
  
     0.725
ABK74821.1
Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.693
ABK72110.1
Conserved hypothetical protein.
  
     0.680
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
   
 
 0.670
ABK69846.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.661
stf0
Conserved hypothetical protein; Catalyzes the sulfuryl group transfer from 3'- phosphoadenosine-5'-phosphosulfate (PAPS) to trehalose, leading to trehalose-2-sulfate (T2S). The sulfation of trehalose is the first step in the biosynthesis of sulfolipid-1 (SL-1), a major cell wall glycolipid in pathogenic mycobacteria. Cannot use free glucose and unnatural stereoisomers of trehalose (alpha,beta (neo-trehalose) and beta,beta (iso-trehalose)) as substrates.
  
     0.628
ABK73981.1
Conserved hypothetical protein.
 
   
 0.620
ABK75214.1
Diguanylate cyclase (ggdef) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
     0.619
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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