STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mmpl4aMmp14a protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. (960 aa)    
Predicted Functional Partners:
mmpS4
MmpS4 protein; Identified by match to protein family HMM PF05423.
  
  
 0.959
gtf1
Putative glycosyl transferase; Identified by match to protein family HMM PF03033.
  
  
 0.864
mmpL4b
Putative transport protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
 
  
0.773
sap
Sigma associated protein; Identified by match to protein family HMM PF04946.
      
 0.768
snm
Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.
  
   
 0.694
ABK73949.1
Conserved hypothetical protein.
  
     0.682
ABK71982.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
  
     0.630
ABK75432.1
Putative acyltransferase; Identified by match to protein family HMM PF01757.
  
  
 0.624
eccB3
Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG.
 
 
 
 0.608
ABK75153.1
Conserved hypothetical protein.
  
    0.597
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.