Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK75432.1Putative acyltransferase; Identified by match to protein family HMM PF01757. (360 aa)    
Predicted Functional Partners:
ABK71204.1
Rmt3 protein.
 
    0.858
gtf1
Putative glycosyl transferase; Identified by match to protein family HMM PF03033.
 
  
 0.729
tylF
Macrocin-O-methyltransferase; Identified by match to protein family HMM PF05711.
 
    0.668
ABK72522.1
NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.663
ABK74149.1
Transcriptional regulatory protein; Identified by match to protein family HMM PF00440.
  
     0.633
mmpl4a
Mmp14a protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
  
  
 0.624
ABK73314.1
Condensation domain protein; Identified by match to protein family HMM PF00668.
  
    0.596
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
 
   
 0.561
ABK70957.1
Conserved hypothetical protein.
 
     0.535
rv1174c
Conserved hypothetical protein.
      
 0.532
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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