Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69779.1Agmatine deiminase; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family. (340 aa)    
Predicted Functional Partners:
ABK70093.1
Identified by match to protein family HMM PF00795.
 
 0.998
ABK75092.1
Arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03711.
  
 
 0.978
speB-2
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
    
 0.965
ABK75274.1
Hydrolase; Identified by match to protein family HMM PF00795.
 
 0.962
speB-3
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
    
 0.887
speB-4
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
    
 0.887
speB
Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
    
 0.864
ABK72089.1
Identified by match to protein family HMM PF07969.
 
   
 0.845
ABK71559.1
Putrescine importer; Identified by match to protein family HMM PF00324.
 
   
 0.812
ABK73836.1
Identified by match to protein family HMM PF00795.
 
 0.787
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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