Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73630.1Transporter, major facilitator family protein, putative; Identified by match to protein family HMM PF00582; match to protein family HMM PF07690. (666 aa)    
Predicted Functional Partners:
ABK73781.1
Amino acid-binding ACT; Identified by match to protein family HMM PF01842.
  
  
 0.715
ABK71324.1
Conserved hypothetical protein.
  
     0.708
ABK72237.1
Conserved hypothetical protein.
  
     0.689
ABK73376.1
Conserved hypothetical protein.
  
  
 0.688
ABK75522.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05976.
  
  
 0.621
ABK73898.1
Identified by match to protein family HMM PF00582.
  
     0.611
ABK75418.1
Carbohydrate kinase, PfkB, putative; Identified by match to protein family HMM PF00294.
 
   
 0.592
ABK69959.1
Cutinase superfamily protein; Identified by match to protein family HMM PF01083.
 
     0.588
ABK75772.1
Conserved hypothetical protein.
  
   
 0.587
ABK69833.1
Conserved hypothetical protein.
 
  
 0.586
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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