Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK69951.1GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. (244 aa)    
Predicted Functional Partners:
gnd
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
 0.818
aroK
Shikimate kinase; Identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313.
 
   
 0.728
ABK69765.1
Phosphocarrier protein hpr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
   
 0.671
ABK71248.1
Inner membrane permease YgbN; Identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791.
 
   
 0.640
ABK71965.1
Aldehyde dehydrogenase; Identified by match to protein family HMM PF00171.
    
 0.618
ABK69975.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.546
ABK76215.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.536
ABK75769.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
  
 0.535
ABK75156.1
GntR family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
  
 0.495
ABK71913.1
Transcriptional regulator, GntR family protein, putative; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
  
 0.493
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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