Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72612.1Identified by match to protein family HMM PF00732; match to protein family HMM PF05199. (532 aa)    
Predicted Functional Partners:
ABK75667.1
Identified by match to protein family HMM PF00581; match to protein family HMM PF00753.
  
 
 0.856
ABK69553.1
Identified by match to protein family HMM PF00753.
  
 
 0.848
ABK76184.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
ABK73065.1
Immunogenic protein MPB64/MPT64.
    
 0.604
ABK75360.1
Immunogenic protein MPB64/MPT64.
    
 0.604
ABK73358.1
2-hydroxycyclohexnecarboxyl-CoA dehydrogenase; Identified by match to protein family HMM PF00106.
  
 
 0.600
ABK75937.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.582
ABK69833.1
Conserved hypothetical protein.
    
 0.576
ABK73809.1
Conserved hypothetical protein.
    
 0.576
ABK74117.1
Conserved hypothetical protein.
    
 0.576
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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