Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70757.1Conserved hypothetical protein; Identified by match to protein family HMM PF00296. (308 aa)    
Predicted Functional Partners:
ABK70844.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
  
  0.783
ABK72991.1
Conserved hypothetical protein.
  
  
  0.754
ABK71322.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
     0.736
ABK71939.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
  
  0.724
ABK75609.1
Putative dehydrogenase; Identified by match to protein family HMM PF00296.
  
     0.723
ABK72828.1
Conserved hypothetical protein.
  
     0.709
ABK73270.1
Hydride transferase 1; Identified by match to protein family HMM PF00296.
  
     0.708
ABK75525.1
Identified by match to protein family HMM PF00296.
  
    0.706
ABK75915.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
     0.703
ABK73358.1
2-hydroxycyclohexnecarboxyl-CoA dehydrogenase; Identified by match to protein family HMM PF00106.
       0.699
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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