Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ABK71685.1ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (242 aa)    
Predicted Functional Partners:
ABK71465.1
ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit; Identified by match to protein family HMM PF00005.
 
 0.995
ABK72495.1
Aliphatic sulfonate binding protein; Identified by match to protein family HMM TIGR01728.
 
 0.992
ABK71040.1
Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.
 
 0.991
ABK69573.1
Sulfonate binding protein; Identified by match to protein family HMM TIGR01728.
 
 0.973
ABK70866.1
Hypothetical protein; Identified by Glimmer2; putative.
 
 0.962
ABK72173.1
ABC transporter, substrate binding protein [nitrate/sulfonate], putative.
 
 0.915
ssuB-3
ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.913
ssuB-2
Putative aliphatic sulfonates transport ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.912
ABK74472.1
Transporter ATPase; Identified by match to protein family HMM PF00005.
 
 0.902
ABK70152.1
Nitrate transport ATP-binding protein NrtD; Identified by match to protein family HMM PF00005.
 
 0.898
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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