Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72405.1Conserved hypothetical protein; Identified by match to protein family HMM PF02566. (164 aa)    
Predicted Functional Partners:
ABK72717.1
Identified by match to protein family HMM PF01152.
      0.833
ABK72462.1
ABC transporter permease protein, putative; Identified by match to protein family HMM PF00528.
     
 0.586
ABK72330.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
     
 0.586
ABK70513.1
Probable sugar ABC transporter, substrate-binding protein, putative; Identified by match to protein family HMM PF01547.
       0.576
ABK71632.1
ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
       0.576
ABK71465.1
ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit; Identified by match to protein family HMM PF00005.
       0.549
ABK69831.1
Starvation-inducible DNA-binding protein or fine tangled pili major subunit; Identified by match to protein family HMM PF00210; Belongs to the Dps family.
  
  
 0.538
dps
Starvation-induced DNA protecting protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It protects DNA from hydroxyl radical-mediated cleavage. Binds DNA with no apparent sequence specificity without self- aggregation nor promotion of DNA condensation. Is unable to protect DNA from DNase-mediated cleavage (By similarity).
  
  
 0.538
ABK74867.1
Conserved domain protein; Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
  
 0.523
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
    0.508
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.