Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK75624.1Helix-turn-helix, Fis-type; Identified by match to protein family HMM PF02954; match to protein family HMM PF07905. (495 aa)    
Predicted Functional Partners:
gabT
4-aminobutyrate transaminase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.681
ABK74669.1
Universal stress protein family protein.
 
     0.666
ABK70087.1
Identified by match to protein family HMM PF00582.
 
     0.666
ABK74199.1
Tetracyclin repressor, C- all-alpha domain protein; Identified by match to protein family HMM PF02909.
  
    0.602
ABK72728.1
Succinic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.566
ABK71332.1
Amino acid permease; Identified by match to protein family HMM PF00324.
 
     0.564
ABK73445.1
Identified by match to protein family HMM PF00582.
 
     0.553
ABK73861.1
GAF domain protein, putative; Identified by match to protein family HMM PF01590.
 
     0.551
ABK72790.1
Amino acid permease; Identified by match to protein family HMM PF00324.
 
     0.550
ABK71821.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.549
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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