Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75437.1Conserved hypothetical protein. (264 aa)    
Predicted Functional Partners:
ABK71672.1
acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.
  
 
 0.795
ABK76167.1
Major facilitator superfamily protein, putative; Identified by match to protein family HMM PF07690.
       0.701
ABK74632.1
MmpS1 protein; Identified by match to protein family HMM PF05423.
       0.585
ABK73756.1
MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
       0.585
ABK74752.1
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
 0.529
katA
Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.
  
 0.524
katA-2
Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.
  
 0.524
ABK71359.1
Acetolactate synthase large subunit; Identified by match to protein family HMM PF02775; match to protein family HMM PF02776.
  
 0.509
ABK71747.1
ZbpA protein; Identified by match to protein family HMM PF01575.
 
 
 0.507
ABK73497.1
MaoC like domain, putative; Identified by match to protein family HMM PF01575.
 
 
 0.486
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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