Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rhaBRhamnulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782. (485 aa)    
Predicted Functional Partners:
rhaI
L-rhamnose isomerase; Identified by match to protein family HMM TIGR02635.
 
  
 0.994
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00596; match to protein family HMM TIGR02632.
 
  
 0.983
rhaU
L-rhamnose 1-epimerase; Identified by match to protein family HMM PF05336.
 
  
 0.917
ABK71795.1
Putative rhamnose catabolism operon transcriptional regulator; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
 
 
 0.913
araB
L-ribulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01234; Belongs to the ribulokinase family.
  
 
 0.878
ABK69896.1
Putative rhamnose tranport protein, MFS family protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
 
  
 0.758
xylA
Xylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02631; Belongs to the xylose isomerase family.
 
 
 0.730
ABK74006.1
L-ribulose-5-phosphate 4-epimerase UlaF; Identified by match to protein family HMM PF00596.
 
 
 0.615
ABK72317.1
3-dehydroshikimate dehydratase; Identified by match to protein family HMM PF01261.
 
 
 0.602
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.593
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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