Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70884.1Beta-lactamase; Identified by match to protein family HMM PF00753. (302 aa)    
Predicted Functional Partners:
ABK75576.1
Para-nitrobenzyl esterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.
 
   
 0.847
ABK74831.1
Helix-turn-helix domain protein; Identified by match to protein family HMM PF01381.
 
    0.672
ABK75874.1
Methyltransferase, putative, family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
       0.543
ABK73818.1
Rhodanese domain protein/cystathionine beta-lyase.
 
 0.540
ABK69677.1
Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.
  
 0.532
ABK72793.1
Conserved hypothetical protein.
 
    0.521
ABK71737.1
Conserved hypothetical protein.
 
 0.506
ABK70687.1
Identified by match to protein family HMM PF00196.
 
 
 
 0.476
ABK70609.1
Identified by match to protein family HMM PF00857.
 
 
 0.475
ABK71920.1
Conserved hypothetical protein.
  
 0.438
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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