Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69638.1Conserved hypothetical protein. (301 aa)    
Predicted Functional Partners:
ABK70413.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
 
    0.814
ABK76063.1
Methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
       0.697
ABK74145.1
Conserved hypothetical protein.
 
     0.532
ABK72637.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
 
     0.478
ABK75103.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
  
     0.454
eccC3
Ftsk/spoiiie family protein; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG.
       0.424
eccB3
Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG.
       0.422
ABK70912.1
Ppe family protein; Identified by match to protein family HMM PF00823.
       0.417
ABK72989.1
Pe family protein; Identified by match to protein family HMM PF00934.
       0.415
ABK71528.1
Conserved hypothetical protein.
  
     0.408
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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