Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK71683.1PAP2 superfamily protein; Identified by match to protein family HMM PF00781; match to protein family HMM PF01569. (487 aa)    
Predicted Functional Partners:
ABK73525.1
PAP2 superfamily protein; Identified by match to protein family HMM PF01569.
 
 0.896
ABK72607.1
Identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490.
  
 0.885
saeC
Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain.
    
 0.820
cdsA
Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.
    
 0.819
ABK75641.1
Identified by match to protein family HMM PF00614.
  
 0.818
ABK71145.1
Fatty acid hydroxylase; Identified by match to protein family HMM PF04116.
 
 
 0.816
ABK70024.1
C-5 sterol desaturase.
   
 0.780
ABK73356.1
C-5 sterol desaturase.
   
 0.780
ABK72784.1
C-5 sterol desaturase.
   
 0.780
ABK69750.1
Metallophosphoesterase; Identified by match to protein family HMM PF00149.
  
 
 0.774
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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