STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70460.1Putative beta-1,3-glucanase; Identified by match to protein family HMM PF00722. (280 aa)    
Predicted Functional Partners:
ABK74136.1
Erp protein.
 
  
 0.730
snm
Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.
  
     0.707
ABK72749.1
Conserved hypothetical protein.
  
     0.687
ABK74255.1
Immunogenic protein MPT63.
  
     0.685
ABK76032.1
Conserved hypothetical protein.
 
     0.654
ABK75545.1
Conserved hypothetical protein.
 
   
 0.644
ABK75765.1
Putative conserved membrane alanine rich protein.
  
     0.643
ABK74007.1
Conserved hypothetical protein.
  
     0.625
ABK71079.1
Membrane protein.
 
   
 0.625
ABK72741.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
  
  
 0.622
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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