STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71983.1Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (200 aa)    
Predicted Functional Partners:
ABK73489.1
Polyamine ABC-transporter, inner membrane subunit; Identified by match to protein family HMM PF00528.
  
    0.633
ABK76088.1
Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355.
       0.631
ABK72333.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.613
ABK74220.1
Polyamine ABC transporter permease protein; Identified by match to protein family HMM PF00528.
       0.610
ABK70746.1
Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.
       0.610
ABK73058.1
Conserved hypothetical protein.
   
    0.549
ABK72040.1
YaeQ protein; Identified by match to protein family HMM PF07152.
   
    0.545
ABK70765.1
Identified by match to protein family HMM PF04909.
  
     0.520
ABK74600.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.496
ABK71149.1
Probable conserved integral membrane protein; Responsible for the addition of alpha-(1-2) mannose branches to the linear mannan core on the biosynthetic pathway to mature Lipoarabinomannan (LAM).
  
    0.494
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.