Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK76088.1Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355. (394 aa)    
Predicted Functional Partners:
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
 
 
 0.863
ABK72776.1
Toluate 1,2-dioxygenase beta subunit; Identified by match to protein family HMM PF00866.
 
 0.842
ABK70746.1
Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.
 
     0.800
ABK74220.1
Polyamine ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
     0.783
ABK73489.1
Polyamine ABC-transporter, inner membrane subunit; Identified by match to protein family HMM PF00528.
 
     0.782
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
 
 
 0.683
ABK69916.1
Conserved hypothetical protein.
  
 0.680
ABK71983.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
       0.631
ABK73254.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
 
 
 0.540
ABK72935.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
 
 
 0.529
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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