Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK69570.1Conserved hypothetical protein. (217 aa)    
Predicted Functional Partners:
ABK75911.1
Hypothetical protein; Identified by Glimmer2; putative.
 
 0.826
ABK75795.1
Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.
   
 0.809
cobA
uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470.
  
 
 0.692
ABK75526.1
ChaB protein; Identified by match to protein family HMM PF06150.
 
  
 0.612
ABK71360.1
ABC-type transport system periplasmic substrate-binding protein; Identified by match to protein family HMM PF01094.
  
 
 0.578
ABK75630.1
Putative periplasmic binding protein; Identified by match to protein family HMM PF01094.
  
 
 0.578
ABK72747.1
Branched-chain amino acid ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01094.
  
 
 0.578
ABK72964.1
Nitrile hydratase regulator1.
  
 
 0.578
ABK72013.1
Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.
  
 
 0.578
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.574
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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