STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72778.1Putative transcriptional regulatory protein; Identified by match to protein family HMM PF00196. (836 aa)    
Predicted Functional Partners:
ABK70539.1
Conserved hypothetical protein.
 
   
 0.929
ABK70772.1
Isoniazid inductible protein IniC.
 
   
 0.792
ABK69859.1
Isoniazid inductible protein IniA.
 
     0.790
ABK73217.1
Conserved hypothetical protein.
  
     0.715
ABK72118.1
Conserved hypothetical protein.
 
     0.714
ABK74862.1
Conserved hypothetical protein.
 
   
 0.713
ABK71946.1
Conserved hypothetical proline and threonine rich protein.
 
   
 0.693
eccE1
Conserved hypothetical protein; Part of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Plays a role in DNA conjugation, in at least a donor strain.
  
     0.690
ABK71702.1
Conserved hypothetical protein.
  
     0.689
ABK76080.1
Probable conserved transmembrane protein; Identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958.
  
     0.687
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.