Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK73557.1LpqJ protein. (179 aa)    
Predicted Functional Partners:
ABK70355.1
Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.
      
 0.821
ABK76075.1
LprE protein.
      
 0.821
ABK73946.1
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
      
 0.821
ABK70225.1
LpqG protein; Identified by match to protein family HMM PF04402.
      
 0.820
ABK73171.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03085.
  
    0.641
ABK70248.1
Putative permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
       0.613
ABK72951.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase; Identified by match to protein family HMM PF03737.
       0.578
ABK73992.1
Conserved hypothetical protein; Identified by similarity to GB:CAD18384.1; match to protein family HMM PF03737.
       0.578
ABK72261.1
Monooxygenase; Identified by match to protein family HMM PF00296.
       0.563
whiB2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (By similarity); Belongs to the WhiB family.
      
 0.495
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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