STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70248.1Putative permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (441 aa)    
Predicted Functional Partners:
ABK73992.1
Conserved hypothetical protein; Identified by similarity to GB:CAD18384.1; match to protein family HMM PF03737.
 
    0.779
ABK72951.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase; Identified by match to protein family HMM PF03737.
 
     0.773
ABK73259.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
  
     0.673
ABK75754.1
Major facilitator superfamily protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
 
 
 0.617
ABK73557.1
LpqJ protein.
       0.613
ABK70401.1
Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
 
  
 0.595
ABK70493.1
Hypothetical metabolite transport protein YaaU; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
  
     0.583
ABK71261.1
Major facilitator family protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
  
     0.554
ABK73846.1
Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
  
 0.530
ABK73171.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03085.
  
    0.502
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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