Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK72663.1Flavohemoprotein; Identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family. (379 aa)    
Predicted Functional Partners:
pyrD
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.921
ABK70723.1
Cytochrome D ubiquinol oxidase subunit 1; Identified by match to protein family HMM PF01654.
   
  
 0.846
ABK70099.1
Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
 0.839
ABK70243.1
Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
 0.839
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
  
 
 0.831
ABK72891.1
Conserved hypothetical protein.
 
 
 0.830
ABK75971.1
Identified by match to protein family HMM PF01381.
  
  
 0.828
ABK73179.1
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.
  
 
 0.827
ABK71212.1
Putative glycosyl transferase; Identified by match to protein family HMM PF03033.
      
 0.824
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
  
 
 0.819
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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